STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21605Hypothetical protein. (704 aa)    
Predicted Functional Partners:
RAM_21600
Peptidase S8 and S53 subtilisin kexin sedolisin; COG4934 Predicted protease.
 
     0.839
RAM_01435
COG3584 Uncharacterized protein conserved in bacteria.
  
   
 0.760
RAM_01315
Hypothetical protein.
 
    0.738
RAM_35455
Mycodextranase.
 
     0.734
RAM_35460
Mycodextranase.
 
     0.722
RAM_37780
SGNH hydrolase containing a LamG-like domain; COG3209 Rhs family protein.
 
 
 0.699
RAM_44005
Lipoprotein.
 
 
 0.686
RAM_23500
COG3979 Uncharacterized protein contain chitin-binding domain type 3.
 
     0.651
RAM_37775
COG3209 Rhs family protein.
 
    0.633
RAM_14785
Hypothetical protein.
  
     0.619
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.