STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21635Copper binding protein of plastocyanin/azurin family; COG3794 Plastocyanin. (213 aa)    
Predicted Functional Partners:
PcoC-2
Copper resistance protein.
 
     0.833
RAM_21640
Hypothetical protein.
       0.784
RAM_21645
Copper binding protein of plastocyanin/azurin family; COG3794 Plastocyanin.
 
    
0.689
RAM_30480
Phosphoesterase.
  
     0.572
CotA
COG2132 Putative multicopper oxidases.
   
 
 0.564
CotA-2
COG2132 Putative multicopper oxidases.
   
 
 0.564
RAM_11355
Hypothetical protein.
  
     0.544
RAM_21630
COG4833 Predicted glycosyl hydrolase.
       0.536
RAM_21655
Hypothetical protein.
       0.533
PcoC-5
Copper resistance protein; COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC.
 
     0.496
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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