STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21680COG0789 Predicted transcriptional regulators. (326 aa)    
Predicted Functional Partners:
RAM_21685
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
       0.631
RAM_21690
Hypothetical protein.
       0.631
RAM_38570
Cholesterol oxidase; COG2303 Choline dehydrogenase and related flavoproteins.
  
  
 0.539
RAM_31515
Integrase; COG4974 Site-specific recombinase XerD.
  
   
 0.458
RAM_21695
Hypothetical protein.
       0.449
ActI
3-oxoacyl-ACP synthase acylcarrier protein; COG0236 Acyl carrier protein.
  
 
   0.439
RAM_38160
Hypothetical protein.
 
     0.406
RAM_40090
COG0582 Integrase.
  
   
 0.406
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.