STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21715HAD family hydrolase; COG0463 Glycosyltransferases involved in cell wall biogenesis. (492 aa)    
Predicted Functional Partners:
RAM_21710
Glycosyl transferase; COG0859 ADP-heptose:LPS heptosyltransferase.
   
 0.983
GmhA-3
COG0279 Phosphoheptose isomerase.
  
 0.942
GmhA-2
COG0279 Phosphoheptose isomerase.
 
  
 0.907
GmhA
COG0279 Phosphoheptose isomerase.
  
 0.906
RAM_21745
Glycosyl transferase; COG0859 ADP-heptose:LPS heptosyltransferase.
 
   
 0.886
RAM_21755
D-beta-D-heptose 7-phosphate kinase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
   
 0.886
RAM_35865
Hypothetical protein; COG1796 DNA polymerase IV (family X).
   
 0.862
RAM_21795
COG0438 Glycosyltransferase.
 
  
 0.850
RAM_21765
Carbamoyltransferase; COG2192 Predicted carbamoyl transferase, NodU family.
 
    0.801
RAM_21750
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.795
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.