STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ugd-2COG1004 Predicted UDP-glucose 6-dehydrogenase. (436 aa)    
Predicted Functional Partners:
GalE-5
UDP-glucose 4-epimerase; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
 0.972
GalU
UTP--glucose-1-phosphate uridylyltransferase; COG1210 UDP-glucose pyrophosphorylase.
 
 0.961
GalE
UDP-glucose 4-epimerase; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
 0.955
GalE-4
UDP-glucose 4-epimerase; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
 0.949
RfbB-2
dTDP-glucose 4,6-dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
 0.936
GalE-2
UDP-glucose 4-epimerase; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
 0.935
Qdb
UDP-sulfoquinovose synthase; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
 0.935
GalE-3
COG1087 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 
 0.928
Ugd
COG1004 Predicted UDP-glucose 6-dehydrogenase.
  
  
 
0.903
RAM_21745
Glycosyl transferase; COG0859 ADP-heptose:LPS heptosyltransferase.
 
   
 0.834
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.