STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21805Inorganic phosphate transporter PiT family protein; COG0306 Phosphate/sulphate permeases. (331 aa)    
Predicted Functional Partners:
RAM_21800
Hypothetical protein; COG1392 Phosphate transport regulator (distant homolog of PhoU).
 
  
 0.980
RAM_21810
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
     
 0.589
RAM_21795
COG0438 Glycosyltransferase.
       0.547
RAM_21815
Peptidase S15; COG2936 Predicted acyl esterases.
       0.542
CysG
uroporphyrin-III C-methyltransferase/precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase; COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain).
  
  
 0.513
RAM_21790
COG0438 Glycosyltransferase.
       0.503
RAM_21820
Hypothetical protein; COG0451 Nucleoside-diphosphate-sugar epimerases.
       0.468
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.451
cysC
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family.
  
  
 0.441
RAM_21825
FAD-dependent oxidoreductase; COG1233 Phytoene dehydrogenase and related proteins.
       0.441
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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