STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21810COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases. (396 aa)    
Predicted Functional Partners:
RAM_21820
Hypothetical protein; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
  
 0.724
RAM_21815
Peptidase S15; COG2936 Predicted acyl esterases.
       0.714
RAM_21825
FAD-dependent oxidoreductase; COG1233 Phytoene dehydrogenase and related proteins.
  
  
 0.630
RAM_21805
Inorganic phosphate transporter PiT family protein; COG0306 Phosphate/sulphate permeases.
     
 0.595
RAM_21800
Hypothetical protein; COG1392 Phosphate transport regulator (distant homolog of PhoU).
  
    0.594
RAM_15555
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
    0.538
RAM_21795
COG0438 Glycosyltransferase.
 
    0.538
RAM_15570
COG3546 Mn-containing catalase.
 
    0.521
RAM_21790
COG0438 Glycosyltransferase.
 
    0.489
RAM_13180
Maltooligosyltrehalose trehalohydrolase; COG0296 1,4-alpha-glucan branching enzyme.
 
  
 0.415
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.