STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21825FAD-dependent oxidoreductase; COG1233 Phytoene dehydrogenase and related proteins. (530 aa)    
Predicted Functional Partners:
RAM_21820
Hypothetical protein; COG0451 Nucleoside-diphosphate-sugar epimerases.
       0.730
RAM_21830
Hypothetical protein.
  
     0.712
RAM_21810
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
  
  
 0.630
RAM_21815
Peptidase S15; COG2936 Predicted acyl esterases.
       0.616
CrtB
COG1562 Phytoene/squalene synthetase.
  
  
 0.532
CrtB-2
COG1562 Phytoene/squalene synthetase.
  
  
 0.532
ChlD
COG1239 Mg-chelatase subunit ChlI.
  
  
 0.454
RAM_21800
Hypothetical protein; COG1392 Phosphate transport regulator (distant homolog of PhoU).
       0.450
RAM_21805
Inorganic phosphate transporter PiT family protein; COG0306 Phosphate/sulphate permeases.
       0.441
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.