STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21895Hypothetical protein. (128 aa)    
Predicted Functional Partners:
RAM_20890
Fused protein kinase and phosphatase containing multi-sensor domain; COG2202 FOG: PAS/PAC domain.
 
 
 0.834
RAM_30220
Two-component system sensor kinase; COG2202 FOG: PAS/PAC domain.
  
 
 0.817
RAM_21885
Hypothetical protein.
 
     0.647
RAM_06375
Hypothetical protein.
  
     0.617
RAM_31420
Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.579
YbdK-2
Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
     
 0.560
RAM_21360
Phosphatase.
 
 
 0.522
RAM_08465
Scramblase family protein; COG1190 Lysyl-tRNA synthetase (class II).
  
     0.519
RAM_01465
COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 
 0.513
RAM_15540
Phosphatase; COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 0.511
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.