STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LdcCCOG1982 Arginine/lysine/ornithine decarboxylases. (502 aa)    
Predicted Functional Partners:
RocF
COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
  
 
 0.917
LdcC-2
COG1982 Arginine/lysine/ornithine decarboxylases.
  
  
 
0.913
RAM_02790
Amidinotransferase; COG1834 N-Dimethylarginine dimethylaminohydrolase.
     
 0.904
RAM_18505
Amidinotransferase; COG1834 N-Dimethylarginine dimethylaminohydrolase.
     
 0.904
RAM_32010
Glycine amidinotransferase; COG1834 N-Dimethylarginine dimethylaminohydrolase.
     
 0.904
Nos
Nitric-oxide synthase; Catalyzes the production of nitric oxide. Belongs to the NOS family. Bacterial NOS oxygenase subfamily.
     
  0.900
arcA
COG2235 Arginine deiminase.
    
 0.829
ArgH
COG0165 Argininosuccinate lyase.
     
 0.816
argH
COG0165 Argininosuccinate lyase.
     
 0.816
RAM_21915
Amidohydrolase; COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; Belongs to the peptidase M20A family.
       0.579
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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