STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21945COG1940 Transcriptional regulator/sugar kinase. (405 aa)    
Predicted Functional Partners:
rifN
Kanosamine kinase; Involved in the biosynthesis of 3-amino-5-hydroxybenzoate (AHBA), a compound that then serves as the starter unit for the assembly of a polyketide during the biosynthesis of rifamycin B and other ansamycin antibiotics. Catalyzes only the phosphorylation of kanosamine to yield kanosamine 6-phosphate.
  
     0.769
RAM_20255
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
  
     0.769
RAM_25795
COG1940 Transcriptional regulator/sugar kinase.
 
     0.769
RAM_17390
COG1940 Transcriptional regulator/sugar kinase.
  
     0.764
RAM_15180
COG1940 Transcriptional regulator/sugar kinase.
  
     0.763
Glk-2
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
  
     0.756
RAM_19830
COG1940 Transcriptional regulator/sugar kinase.
  
     0.733
RAM_05855
COG1940 Transcriptional regulator/sugar kinase.
  
     0.729
RAM_21940
ABC transporter substrate-binding protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
     0.623
TauD-2
COG2175 Probable taurine catabolism dioxygenase.
 
   
 0.605
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.