STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21960Hypothetical protein. (284 aa)    
Predicted Functional Partners:
RAM_21955
Epocide hydrolase domain-containing protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.779
RAM_21965
SARP family transcriptional regulator fused with ATPase domain; COG3903 Predicted ATPase.
 
     0.587
RAM_21950
HTH type 11 transcriptional regulator; COG2378 Predicted transcriptional regulator.
       0.581
RAM_12580
LuxR family transcriptional regulator fused with ATPase domain; COG3899 Predicted ATPase.
 
     0.496
RAM_30020
Transmembrane transport protein.
  
    0.468
RAM_21970
FAD-dependent oxidoreductase; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
       0.454
RAM_21945
COG1940 Transcriptional regulator/sugar kinase.
       0.435
RAM_34125
Hypothetical protein.
  
     0.420
RAM_06690
COG1309 Transcriptional regulator.
  
     0.418
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.