STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21980Hypothetical protein; COG2508 Regulator of polyketide synthase expression. (372 aa)    
Predicted Functional Partners:
RAM_21975
Histidine triad (HIT) protein; COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases.
       0.773
RAM_03130
Hypothetical protein.
  
     0.668
RAM_16480
Terpene synthase.
  
     0.660
RAM_07500
Hypothetical protein.
  
     0.617
RAM_40600
Hypothetical protein.
  
    0.608
RAM_31450
Hypothetical protein.
  
     0.600
RAM_22450
Hypothetical protein.
  
     0.593
RAM_05330
Hypothetical protein.
  
     0.589
RAM_15995
ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.589
RAM_01615
Hypothetical protein.
  
     0.584
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.