STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AscDCOG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases. (342 aa)    
Predicted Functional Partners:
RAM_22025
Methane/phenol/toluene hydroxylase.
 
  
 0.995
RAM_22030
Monooxygenase component MmoB/DmpM.
 
  
 0.995
RAM_22015
Methane monooxygenase.
 
 
 0.994
Adh-7
COG1064 Zn-dependent alcohol dehydrogenases.
 
  
 0.981
NuoF-2
COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
  
 
 0.936
pyrD
Dihydroorotate dehydrogenase 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 
 0.929
Fpr-2
ferredoxin--NADP+ reductase; COG1146 Ferredoxin.
   
 0.921
RAM_22040
Hypothetical protein; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
 
  
 0.914
FadH
NADPH-dependent 2,4-dienoyl-CoA reductase; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
 0.901
RAM_22035
Amidohydrolase; COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
     0.874
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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