STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22055Hypothetical protein. (469 aa)    
Predicted Functional Partners:
RAM_07770
Glycoside hydrolase; Belongs to the glycosyl hydrolase 28 family.
  
     0.648
RAM_17355
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.647
RAM_22060
Fused NTPase and glycosyl transferase; COG1396 Predicted transcriptional regulators.
 
 
 0.622
RAM_20915
Hypothetical protein.
 
  
 0.616
RAM_03840
Hypothetical protein.
  
     0.613
RAM_47915
COG4585 Signal transduction histidine kinase.
  
     0.606
RAM_08585
Ankyrin repeat-containing protein; COG0666 FOG: Ankyrin repeat.
 
 0.603
RAM_16700
COG2940 Proteins containing SET domain.
  
 0.600
UgtP
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
 
 
 0.587
RAM_28080
Hypothetical protein.
  
     0.583
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.