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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22060Fused NTPase and glycosyl transferase; COG1396 Predicted transcriptional regulators. (1178 aa)    
Predicted Functional Partners:
RAM_25725
Hypothetical protein; COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase].
 
 
 0.707
RAM_22055
Hypothetical protein.
 
 
 0.622
RAM_13180
Maltooligosyltrehalose trehalohydrolase; COG0296 1,4-alpha-glucan branching enzyme.
   
 0.530
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.530
RAM_18145
Hypothetical protein; COG0296 1,4-alpha-glucan branching enzyme.
   
 0.530
RAM_19820
Hypothetical protein.
 
 
 
 0.530
RAM_32775
Hypothetical protein; COG0296 1,4-alpha-glucan branching enzyme.
   
 0.530
RAM_08255
COG2360 Leu/Phe-tRNA-protein transferase.
 
 
 
 0.517
RAM_24220
XRE family transcriptional regulator; COG3903 Predicted ATPase.
 
  
 0.510
RAM_10300
COG3620 Predicted transcriptional regulator with C-terminal CBS domains.
 
 
0.480
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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