STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22090COG0435 Predicted glutathione S-transferase. (327 aa)    
Predicted Functional Partners:
RAM_22095
COG1846 Transcriptional regulators.
     
 0.775
RAM_22085
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
    0.661
RAM_22100
YceI-like protein; Belongs to the UPF0312 family.
     
 0.628
Gst
COG0625 Glutathione S-transferase.
  
 
 0.616
RAM_22080
Microsomal epoxide hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.507
OtsB
Trehalose-phosphatase/glycoside hydrolase; COG1877 Trehalose-6-phosphatase.
   
   0.462
RAM_33155
Hypothetical protein.
  
    0.446
RAM_39565
COG1225 Peroxiredoxin.
   
  
 0.445
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.