STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LacI-11COG1609 Transcriptional regulators. (335 aa)    
Predicted Functional Partners:
RAM_15755
COG1609 Transcriptional regulators.
  
     0.764
RAM_22455
COG1609 Transcriptional regulators.
  
     0.759
LacI-22
COG1609 Transcriptional regulators.
  
     0.759
LacI-6
COG1349 Transcriptional regulators of sugar metabolism.
  
   
 0.718
RAM_22130
COG1653 ABC-type sugar transport system, periplasmic component.
 
   
 0.675
LacI-20
COG1609 Transcriptional regulators.
  
     0.645
RAM_22125
COG1175 ABC-type sugar transport systems, permease components.
       0.617
RAM_22145
COG1472 Beta-glucosidase-related glycosidases.
 
     0.594
RAM_22140
Hypothetical protein.
       0.530
YicI
COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family.
 
   
 0.517
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.