STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22170Oxidoreductase; COG0778 Nitroreductase. (220 aa)    
Predicted Functional Partners:
RAM_32010
Glycine amidinotransferase; COG1834 N-Dimethylarginine dimethylaminohydrolase.
  
   
 0.498
RAM_22175
Hypothetical protein.
       0.477
RAM_22180
COG0247 Fe-S oxidoreductase.
       0.433
RAM_22260
Hypothetical protein.
  
  
 0.421
RAM_30510
Hypothetical protein; COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases.
  
  
 0.421
RAM_35345
Hypothetical protein.
  
  
 0.421
RAM_35535
Hypothetical protein; COG0381 UDP-N-acetylglucosamine 2-epimerase.
 
  
 0.420
RAM_35375
CAAX amino terminal protease; COG1266 Predicted metal-dependent membrane protease.
 
  
 0.415
RAM_20005
Polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
 0.412
RAM_27600
COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase.
  
     0.410
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.