STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22185FHA domain-containing protein; COG1716 FOG: FHA domain. (256 aa)    
Predicted Functional Partners:
kgd
Alpha-ketoglutarate decarboxylase; COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
   
 
 0.971
RAM_00255
COG0515 Serine/threonine protein kinase.
 
 
 
 0.864
RAM_11800
COG0515 Serine/threonine protein kinase.
 
 
 
 0.861
RAM_35035
COG2902 NAD-specific glutamate dehydrogenase.
    
 
 0.836
RAM_01775
Protein kinase; COG0515 Serine/threonine protein kinase.
   
 
 0.808
RAM_30010
COG0515 Serine/threonine protein kinase.
   
 
 0.808
RAM_22190
Hypothetical protein.
       0.773
RAM_20890
Fused protein kinase and phosphatase containing multi-sensor domain; COG2202 FOG: PAS/PAC domain.
  
  
 0.687
RAM_37485
Rhs family protein; COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins.
 
 0.643
RAM_42850
COG0515 Serine/threonine protein kinase.
 
 
 
 0.560
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.