STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22235Hypothetical protein; COG0457 FOG: TPR repeat. (1052 aa)    
Predicted Functional Partners:
RAM_34185
Probable chaperone protein; COG0326 Molecular chaperone, HSP90 family.
 
 0.586
RAM_29875
Hypothetical protein; COG2319 FOG: WD40 repeat.
  
 
 0.585
RAM_10870
UBA/ThiF-type NAD/FAD binding protein; COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
 
 0.544
RAM_22215
COG1653 ABC-type sugar transport system, periplasmic component.
   
   0.537
RAM_22240
Hypothetical protein.
       0.535
RAM_27425
COG4249 Uncharacterized protein containing caspase domain.
  
 
 0.522
RAM_22220
COG1175 ABC-type sugar transport systems, permease components.
       0.510
RAM_22225
COG0395 ABC-type sugar transport system, permease component.
       0.510
NagZ-2
beta-N-acetylhexosaminidase; COG1472 Beta-glucosidase-related glycosidases.
     
 0.510
RAM_43620
ATPase; COG0464 ATPases of the AAA+ class.
 
 0.508
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.