STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22335Hypothetical protein. (307 aa)    
Predicted Functional Partners:
RAM_19155
Hypothetical protein.
  
     0.675
RAM_19345
LamG domain-containing protein receptor.
  
    0.662
RAM_39570
Large ATP-binding protein; COG5635 Predicted NTPase (NACHT family).
  
     0.600
RAM_26010
Hypothetical protein; COG0438 Glycosyltransferase.
  
     0.579
RAM_08330
PA domain-containing protein.
 
    0.574
RAM_39465
Hypothetical protein.
  
     0.568
RAM_15995
ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.558
RAM_22800
Hypothetical protein.
  
     0.546
RAM_12515
Hypothetical protein.
  
     0.534
RAM_24140
Hypothetical protein.
  
     0.532
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.