STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22370Hypothetical protein. (493 aa)    
Predicted Functional Partners:
PhoA
Alkaline phosphatase; COG3291 FOG: PKD repeat.
 
 
 0.649
RAM_30400
COG3227 Zinc metalloprotease (elastase).
  
   
 0.560
RAM_00630
Hypothetical protein.
  
     0.556
RAM_37910
Hypothetical protein.
  
     0.556
RAM_10585
Hypothetical protein.
 
   
 0.540
RAM_42920
Acyltransferase; COG1835 Predicted acyltransferases.
  
     0.507
RAM_34250
Hypothetical protein; COG1357 Uncharacterized low-complexity proteins.
 
    0.493
RAM_22375
Hypothetical protein.
       0.479
RAM_05275
COG3227 Zinc metalloprotease (elastase).
  
   
 0.478
RAM_11430
Integral membrane protein.
 
    0.477
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.