STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22385Hypothetical protein; COG3568 Metal-dependent hydrolase. (323 aa)    
Predicted Functional Partners:
DacC-2
COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.781
RAM_38570
Cholesterol oxidase; COG2303 Choline dehydrogenase and related flavoproteins.
  
     0.455
RAM_40265
COG0789 Predicted transcriptional regulators.
  
     0.432
RAM_43090
Hypothetical protein.
  
     0.432
RAM_29630
OmpA-OmpF porin, OOP family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
   
  
 0.428
RAM_44080
OmpA family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
   
  
 0.428
RAM_22375
Hypothetical protein.
       0.422
RAM_22390
COG1609 Transcriptional regulators.
       0.408
RAM_17810
Hypothetical protein.
  
     0.405
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.