STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AbfA-9alpha-N-arabinofuranosidase; COG3534 Alpha-L-arabinofuranosidase. (1266 aa)    
Predicted Functional Partners:
RAM_27340
COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.735
RAM_20045
Glycoside hydrolase; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.710
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.708
AbnA-2
Arabinan endo-1,5-alpha-L-arabinosidase; COG3507 Beta-xylosidase.
 
  
 0.704
AbnA
Arabinan endo-1,5-alpha-L-arabinosidase; COG3507 Beta-xylosidase.
 
  
 0.689
RAM_17360
COG3533 Uncharacterized protein conserved in bacteria.
 
   
 0.688
RAM_20310
Large protein.
 
   
 0.686
AraD
COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
 
  
 0.656
RAM_23510
Hypothetical protein.
 
     0.643
araB
Ribulokinase; COG1069 Ribulose kinase.
  
  
 0.633
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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