STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AraDCOG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases. (225 aa)    
Predicted Functional Partners:
araB
Ribulokinase; COG1069 Ribulose kinase.
 
 
 0.996
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.967
xylB
D-xylulose kinase; COG1070 Sugar (pentulose and hexulose) kinases.
 
 
 0.949
Rpe
COG0036 Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.916
XylF-2
COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.724
XylH
COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.703
XylG
COG1129 ABC-type sugar transport system, ATPase component.
  
  
 0.683
AbfA-9
alpha-N-arabinofuranosidase; COG3534 Alpha-L-arabinofuranosidase.
 
  
 0.656
RAM_22395
COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.608
RAM_22405
Sugar ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
    0.563
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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