STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (499 aa)    
Predicted Functional Partners:
araB
Ribulokinase; COG1069 Ribulose kinase.
 
 
 0.999
AraD
COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
 
 
 0.994
AbfA-11
alpha-N-arabinofuranosidase; COG3534 Alpha-L-arabinofuranosidase.
 
 
 0.940
RAM_32880
COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.907
AraA
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
 
0.904
RAM_16715
Hypothetical protein; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.884
FucA
L-fuculose-phosphate aldolase; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
 
  
 0.838
FucA-2
L-fuculose-phosphate aldolase; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
 
  
 0.830
xylA
COG2115 Xylose isomerase; Belongs to the xylose isomerase family.
 
   
 0.820
AbfA
alpha-N-arabinofuranosidase.
     
  0.800
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.