STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XylF-2COG1879 ABC-type sugar transport system, periplasmic component. (368 aa)    
Predicted Functional Partners:
XylH
COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 0.981
XylG
COG1129 ABC-type sugar transport system, ATPase component.
  
 0.956
araB
Ribulokinase; COG1069 Ribulose kinase.
 
     0.800
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.792
AraD
COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
 
  
 0.731
RAM_22405
Sugar ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
   
 0.697
RAM_22410
Inner membrane ABC transporter permease protein YjfF; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
   
 0.685
RAM_22400
COG1129 ABC-type sugar transport system, ATPase component.
  
 0.593
RAM_13130
ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
  
 0.582
RAM_22395
COG1879 ABC-type sugar transport system, periplasmic component.
 
  
0.519
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.