STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
XylHCOG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. (406 aa)    
Predicted Functional Partners:
RAM_22400
COG1129 ABC-type sugar transport system, ATPase component.
 
 
 0.983
XylF-2
COG1879 ABC-type sugar transport system, periplasmic component.
  
 0.981
XylG
COG1129 ABC-type sugar transport system, ATPase component.
 
  
 0.954
RAM_22410
Inner membrane ABC transporter permease protein YjfF; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
  
 
0.951
XylF
Sugar ABC transporter periplasmic protein; COG4213 ABC-type xylose transport system, periplasmic component.
 
  
 0.794
RAM_22395
COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.778
RbsA
COG1129 ABC-type sugar transport system, ATPase component.
 
  
 0.759
AraG
COG1129 ABC-type sugar transport system, ATPase component.
 
  
 0.748
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
   
 0.743
rbsA
Sugar ABC transporter ATPase; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
  
 0.730
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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