STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XylHCOG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. (406 aa)    
Predicted Functional Partners:
RAM_22400
COG1129 ABC-type sugar transport system, ATPase component.
 
 0.983
XylF-2
COG1879 ABC-type sugar transport system, periplasmic component.
  
 0.981
XylG
COG1129 ABC-type sugar transport system, ATPase component.
  
 0.955
RAM_22410
Inner membrane ABC transporter permease protein YjfF; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
  
 
0.951
XylF
Sugar ABC transporter periplasmic protein; COG4213 ABC-type xylose transport system, periplasmic component.
  
 0.793
RAM_22395
COG1879 ABC-type sugar transport system, periplasmic component.
  
 0.783
RbsA
COG1129 ABC-type sugar transport system, ATPase component.
  
 0.760
AraG
COG1129 ABC-type sugar transport system, ATPase component.
  
 0.749
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.743
rbsA
Sugar ABC transporter ATPase; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
 0.730
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.