STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22510COG3629 DNA-binding transcriptional activator of the SARP family. (885 aa)    
Predicted Functional Partners:
RAM_37780
SGNH hydrolase containing a LamG-like domain; COG3209 Rhs family protein.
  
     0.610
RAM_22505
COG1309 Transcriptional regulator.
       0.501
RAM_13985
Hypothetical protein.
  
     0.498
RAM_46800
Hypothetical protein; COG4118 Antitoxin of toxin-antitoxin stability system.
  
     0.464
RAM_14785
Hypothetical protein.
  
     0.451
vapC-2
Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.437
RAM_26410
Hypothetical protein.
  
    0.424
RAM_31195
UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases.
  
     0.413
RAM_21605
Hypothetical protein.
 
    0.410
RAM_10300
COG3620 Predicted transcriptional regulator with C-terminal CBS domains.
 
  
0.408
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.