STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22540Xylitol oxidase; COG0277 FAD/FMN-containing dehydrogenases. (417 aa)    
Predicted Functional Partners:
xylA
COG2115 Xylose isomerase; Belongs to the xylose isomerase family.
 
  
  0.924
GutB
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
  
 
 0.904
AbfA-11
alpha-N-arabinofuranosidase; COG3534 Alpha-L-arabinofuranosidase.
  
  
  0.829
AbfA
alpha-N-arabinofuranosidase.
    
 0.806
AbfA-3
alpha-N-arabinofuranosidase.
    
 0.806
RAM_16715
Hypothetical protein; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
   
 
  0.806
AbfA-4
alpha-L-arabinofuranosidase.
    
 0.806
AbfA-6
alpha-N-arabinofuranosidase.
    
 0.806
AbfA-7
alpha-N-arabinofuranosidase.
    
 0.806
RAM_32880
COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
   
 
  0.806
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.