STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PelCOG3866 Pectate lyase. (428 aa)    
Predicted Functional Partners:
RAM_22600
Pectinesterase; COG4677 Pectin methylesterase.
 
 0.991
Pel-2
Pectate lyase.
 
  
 0.980
RAM_22575
Oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
 
     0.902
RAM_22585
Hypothetical protein.
 
     0.892
RAM_22555
COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.837
RAM_22560
COG1175 ABC-type sugar transport systems, permease components.
 
     0.798
RAM_22565
COG0395 ABC-type sugar transport system, permease component.
 
     0.798
RAM_22580
Oxidoreductase domain-containing protein; COG0673 Predicted dehydrogenases and related proteins.
 
     0.793
RAM_22550
Oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
 
     0.760
RAM_22570
Hypothetical protein.
       0.757
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.