STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LacZ-2COG1874 Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family. (962 aa)    
Predicted Functional Partners:
AbnA-2
Arabinan endo-1,5-alpha-L-arabinosidase; COG3507 Beta-xylosidase.
 
  
 0.758
RAM_26250
Hypothetical protein.
 
 
 0.738
RAM_38140
Hypothetical protein.
 
    0.640
RAM_05610
alpha-L-rhamnosidase.
 
     0.597
SrfJ
Glucosylceramidase; COG5520 O-Glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
 
 
 0.558
RAM_29530
alpha-L-rhamnosidase.
 
     0.556
RAM_20045
Glycoside hydrolase; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.551
RAM_20000
Hypothetical protein.
 
 0.549
Neu
COG4409 Neuraminidase (sialidase).
 
 0.545
AbfA
alpha-N-arabinofuranosidase.
 
 
 0.531
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.