STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LacZ-2COG1874 Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family. (962 aa)    
Predicted Functional Partners:
AbnA-2
Arabinan endo-1,5-alpha-L-arabinosidase; COG3507 Beta-xylosidase.
 
  
 0.760
RAM_26250
Hypothetical protein.
 
 
 0.746
RAM_38140
Hypothetical protein.
 
    0.628
RAM_05610
alpha-L-rhamnosidase.
 
     0.597
RAM_26630
alpha-L-fucosidase; COG4962 Flp pilus assembly protein, ATPase CpaF.
 
 
 0.569
SrfJ
Glucosylceramidase; COG5520 O-Glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
 
 
 0.565
RAM_29530
alpha-L-rhamnosidase.
 
     0.556
RAM_20045
Glycoside hydrolase; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.553
AbfA
alpha-N-arabinofuranosidase.
 
 
 0.539
RAM_42055
COG2939 Carboxypeptidase C (cathepsin A).
   
 0.532
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.