STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22620SARP family transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (706 aa)    
Predicted Functional Partners:
RAM_17900
Transmembrane anti-sigma factor.
  
     0.526
RAM_16900
LuxR family transcriptional regulator fused with ATPase domain; COG3903 Predicted ATPase.
    0.508
RAM_22625
Hypothetical protein; COG0492 Thioredoxin reductase.
       0.493
RAM_29585
ATPase; COG3903 Predicted ATPase.
 
    0.482
RAM_10775
Hypothetical protein; COG2368 Aromatic ring hydroxylase.
  
     0.465
RAM_15635
Hypothetical protein; COG3408 Glycogen debranching enzyme.
  
     0.447
RAM_26945
LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins.
 
     0.416
RAM_28795
Hypothetical protein.
  
     0.416
RAM_17945
Hypothetical protein.
 
    0.401
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.