STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22655Hypothetical protein. (156 aa)    
Predicted Functional Partners:
PilB
COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
  
 
 0.964
PilC
Type IV pilus assembly protein PilC; COG1459 Type II secretory pathway, component PulF.
  
  
 0.963
PilT
COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.
  
  
 0.854
RAM_22645
Hypothetical protein.
       0.822
RAM_22650
Hypothetical protein.
       0.807
ComE
Competence protein ComEC; COG0658 Predicted membrane metal-binding protein.
  
  
 0.735
RAM_22675
Type IV pilus assembly protein PilA.
     
 0.678
Smf
DNA processing protein; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
  
  
 0.518
PilD
Leader peptidase (prepilin peptidase)/N-methyltransferase; COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
  
  
 0.510
PilD-2
Leader peptidase (prepilin peptidase)/N-methyltransferase.
  
  
 0.507
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.