STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22760Glycosyl hydrolase; COG3250 Beta-galactosidase/beta-glucuronidase. (1193 aa)    
Predicted Functional Partners:
RAM_21020
Glycogen debranching enzyme.
 
   
 0.740
RAM_23510
Hypothetical protein.
  
   
 0.683
RAM_17355
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.632
RAM_18325
Cupin 2 domain-containing protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
 
     0.605
RAM_17435
COG4034 Uncharacterized protein conserved in archaea.
  
     0.586
RAM_17360
COG3533 Uncharacterized protein conserved in bacteria.
 
     0.562
RAM_22755
Hypothetical protein.
 
     0.555
RAM_29130
Cupin 2 domain-containing protein; COG3435 Gentisate 1,2-dioxygenase.
  
     0.542
RAM_20885
NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
    0.503
RAM_29360
COG0425 Predicted redox protein, regulator of disulfide bond formation.
  
     0.503
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.