STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22840Esterase; COG0627 Predicted esterase. (330 aa)    
Predicted Functional Partners:
UgtP
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
 
 0.913
RAM_12740
Hypothetical protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins; Belongs to the long-chain O-acyltransferase family.
     
 0.902
RAM_40410
Hypothetical protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins; Belongs to the long-chain O-acyltransferase family.
     
 0.902
RAM_41020
Hypothetical protein; Belongs to the long-chain O-acyltransferase family.
     
 0.902
RAM_06890
Lipase class 2; COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold.
     
  0.900
RAM_11780
Hypothetical protein; Belongs to the long-chain O-acyltransferase family.
     
  0.900
RAM_24840
COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase.
     
  0.900
RAM_22845
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.786
RAM_16640
COG1062 Zn-dependent alcohol dehydrogenases, class III.
  
 
 0.627
RAM_43205
COG1062 Zn-dependent alcohol dehydrogenases, class III.
  
 
 0.627
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.