STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22840Esterase; COG0627 Predicted esterase. (330 aa)    
Predicted Functional Partners:
RAM_22825
COG3321 Polyketide synthase modules and related proteins.
 
 
 0.958
UgtP
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
 
 0.912
RAM_24840
COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase.
     
  0.900
RAM_13195
Trehalose synthase; COG0366 Glycosidases.
    
  0.804
RAM_13180
Maltooligosyltrehalose trehalohydrolase; COG0296 1,4-alpha-glucan branching enzyme.
     
  0.800
RAM_15145
Glycosyl hydrolase; COG1554 Trehalose and maltose hydrolases (possible phosphorylases).
     
  0.800
RAM_22845
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.788
RAM_16640
COG1062 Zn-dependent alcohol dehydrogenases, class III.
  
 
 0.686
RAM_43205
COG1062 Zn-dependent alcohol dehydrogenases, class III.
  
 
 0.686
RAM_22830
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
 
 0.557
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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