STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22895COG1309 Transcriptional regulator. (195 aa)    
Predicted Functional Partners:
RAM_22890
COG2124 Cytochrome P450.
 
     0.823
RAM_25530
COG3662 Uncharacterized protein conserved in bacteria.
  
     0.558
RAM_22885
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.538
RAM_16600
Anti-anti-sigma factor.
  
     0.536
RAM_21050
Hypothetical protein.
  
     0.494
RAM_13255
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.463
RAM_33370
Hypothetical protein.
  
     0.441
RAM_22875
Flavin binding monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.
     
 0.423
RAM_22880
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.422
RAM_21090
Hypothetical protein.
  
     0.415
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.