STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22945SGNH hydrolase; COG2755 Lysophospholipase L1 and related esterases. (404 aa)    
Predicted Functional Partners:
RAM_22975
Hypothetical protein.
 
   0.827
BglX-2
COG1472 Beta-glucosidase-related glycosidases.
     
 0.773
RAM_18715
Hypothetical protein.
  
   0.699
XynA
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.673
AbfA-12
alpha-N-arabinofuranosidase.
  
   
 0.650
AbfA-10
alpha-N-arabinofuranosidase.
  
   
 0.646
RAM_20365
COG3693 Beta-1,4-xylanase.
 
 
   0.635
LacI-12
Transcriptional regulator, LacI family; COG1609 Transcriptional regulators.
       0.632
XynA-3
Endo-1,4-beta-xylanase; COG3693 Beta-1,4-xylanase.
 
 
   0.607
XynA-6
Glycosyl hydrolase/beta-1,4-xylanase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
 
 
 0.577
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.