STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_22975Hypothetical protein. (1010 aa)    
Predicted Functional Partners:
RAM_22945
SGNH hydrolase; COG2755 Lysophospholipase L1 and related esterases.
 
   0.827
RAM_22960
COG1653 ABC-type sugar transport system, periplasmic component.
       0.741
RAM_22965
COG1175 ABC-type sugar transport systems, permease components.
       0.741
RAM_22970
COG0395 ABC-type sugar transport system, permease component.
       0.741
RAM_20365
COG3693 Beta-1,4-xylanase.
 
   
 0.723
RAM_38100
Rhamnogalacturan acetylesterase; COG2755 Lysophospholipase L1 and related esterases.
  
   0.723
RAM_38145
Rhamnogalacturan acetylesterase; COG2755 Lysophospholipase L1 and related esterases.
  
   0.722
RAM_19080
Glycoside hydrolase; COG4124 Beta-mannanase; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.718
RAM_16710
Xylosidase/glycosyl hydrolase; COG3507 Beta-xylosidase.
 
   
 0.687
RAM_41515
COG5434 Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
 
 0.685
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.