STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XynA-4Endo-1,4-beta-xylanase; COG3693 Beta-1,4-xylanase. (307 aa)    
Predicted Functional Partners:
AbfA-12
alpha-N-arabinofuranosidase.
   0.762
AbfA-10
alpha-N-arabinofuranosidase.
   0.760
RAM_26385
Endo-1,4-beta-glucanase; COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A).
 
   
 0.732
RAM_43615
Carbohydrate-binding protein.
  
   
 0.731
XynA
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
   
 0.699
RAM_18715
Hypothetical protein.
 
     0.699
AbfA-2
alpha-N-arabinofuranosidase; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
   0.698
RAM_26445
COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A); Belongs to the glycosyl hydrolase family 6.
 
   
 0.691
AbnA-2
Arabinan endo-1,5-alpha-L-arabinosidase; COG3507 Beta-xylosidase.
 
   
 0.678
AbnA
Arabinan endo-1,5-alpha-L-arabinosidase; COG3507 Beta-xylosidase.
 
   
 0.673
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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