STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23030COG3293 Transposase and inactivated derivatives. (117 aa)    
Predicted Functional Partners:
RAM_23035
IS4 family transposase; COG3293 Transposase and inactivated derivatives.
 
     0.867
RAM_29715
IS4 family transposase; COG3293 Transposase and inactivated derivatives.
 
     0.715
RAM_19370
IS4 family transposase; COG3293 Transposase and inactivated derivatives.
 
     0.696
RAM_29025
IS4 family transposase; COG3039 Transposase and inactivated derivatives, IS5 family.
 
     0.688
RAM_29580
Transposase; COG5659 FOG: Transposase.
 
   
 0.501
RAM_36305
Transposase; COG5659 FOG: Transposase.
 
   
 0.485
RAM_29745
Transposase; COG5659 FOG: Transposase.
 
   
 0.460
RAM_14745
Hypothetical protein.
  
     0.457
RAM_23025
Hypothetical protein.
       0.436
RAM_24390
COG3293 Transposase and inactivated derivatives.
  
     0.425
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.