STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23035IS4 family transposase; COG3293 Transposase and inactivated derivatives. (132 aa)    
Predicted Functional Partners:
RAM_23030
COG3293 Transposase and inactivated derivatives.
 
     0.867
RAM_19365
COG3293 Transposase and inactivated derivatives.
 
     0.715
RAM_29710
COG3293 Transposase and inactivated derivatives.
 
     0.715
RAM_36305
Transposase; COG5659 FOG: Transposase.
 
   
 0.645
RAM_29745
Transposase; COG5659 FOG: Transposase.
 
   
 0.573
RAM_29580
Transposase; COG5659 FOG: Transposase.
 
   
 0.542
RAM_29020
COG3293 Transposase and inactivated derivatives.
 
     0.536
RAM_23040
CorA-like magnesium transport protein; COG0598 Mg2+ and Co2+ transporters.
       0.510
RAM_00115
Hypothetical protein; COG2812 DNA polymerase III, gamma/tau subunits.
  
     0.477
RAM_23050
Magnesium or manganese-dependent protein phosphatase; COG2202 FOG: PAS/PAC domain.
 
    0.435
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.