STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23035IS4 family transposase; COG3293 Transposase and inactivated derivatives. (132 aa)    
Predicted Functional Partners:
RAM_23030
COG3293 Transposase and inactivated derivatives.
 
     0.866
RAM_19365
COG3293 Transposase and inactivated derivatives.
 
     0.713
RAM_29710
COG3293 Transposase and inactivated derivatives.
 
     0.713
RAM_36305
Transposase; COG5659 FOG: Transposase.
 
     0.642
RAM_29745
Transposase; COG5659 FOG: Transposase.
 
     0.569
RAM_29580
Transposase; COG5659 FOG: Transposase.
 
     0.538
RAM_29020
COG3293 Transposase and inactivated derivatives.
 
     0.532
RAM_23040
CorA-like magnesium transport protein; COG0598 Mg2+ and Co2+ transporters.
       0.510
RAM_00115
Hypothetical protein; COG2812 DNA polymerase III, gamma/tau subunits.
  
     0.477
RAM_23050
Magnesium or manganese-dependent protein phosphatase; COG2202 FOG: PAS/PAC domain.
 
    0.435
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.