STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23060COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
RAM_10285
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.765
RAM_32375
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.757
RAM_32635
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.733
RAM_31470
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.721
RAM_38190
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.689
HcaR-3
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.632
RAM_18620
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.621
ChaA
COG0387 Ca2+/H+ antiporter.
       0.615
PoxB-2
Pyruvate dehydrogenase; COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; Belongs to the TPP enzyme family.
     
 0.554
RAM_30105
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.401
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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