STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LacZ-3COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family. (778 aa)    
Predicted Functional Partners:
GalM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.930
AraA
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
    
 0.924
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
 0.919
GalM-2
Aldose 1-epimerase; COG2017 Galactose mutarotase and related enzymes.
  
 
 0.910
Neu
COG4409 Neuraminidase (sialidase).
    
 0.906
SrfJ
Glucosylceramidase; COG5520 O-Glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
  
 
  0.903
Glk
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
    
 0.902
Glk-3
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
    
 0.902
xylA
COG2115 Xylose isomerase; Belongs to the xylose isomerase family.
    
 0.812
RAM_22540
Xylitol oxidase; COG0277 FAD/FMN-containing dehydrogenases.
    
  0.804
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.