STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LacI-14COG1609 Transcriptional regulators. (348 aa)    
Predicted Functional Partners:
RhaS
COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.634
RhaP
Sugar ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
    0.627
RhaQ
Sugar ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
    0.627
RhaB
Rhamnulokinase; COG1070 Sugar (pentulose and hexulose) kinases.
 
 
 
 0.600
RhaA
L-rhamnose isomerase-like protein; COG4952 Predicted sugar isomerase.
 
     0.593
RhaD
Short chain dehydrogenase.
 
   0.589
LacZ-3
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
     
 0.581
RAM_28930
COG1609 Transcriptional regulators.
  
     0.574
rbsA
Sugar ABC transporter ATPase; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
  
 0.571
RhaM
L-rhamnose mutarotase.
 
     0.501
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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