STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RhaML-rhamnose mutarotase. (111 aa)    
Predicted Functional Partners:
RhaA
L-rhamnose isomerase-like protein; COG4952 Predicted sugar isomerase.
 
  
  0.973
RhaD
Short chain dehydrogenase.
 
  
 0.956
RhaB
Rhamnulokinase; COG1070 Sugar (pentulose and hexulose) kinases.
 
  
 0.941
RhaS
COG1879 ABC-type sugar transport system, periplasmic component.
 
    0.829
AraA
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
   
 0.811
RhaP
Sugar ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
    0.597
RhaQ
Sugar ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
    0.583
RAM_29575
Rhamnosidase.
 
   
 0.538
RAM_22555
COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.532
RAM_38135
COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.523
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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