STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RhaAL-rhamnose isomerase-like protein; COG4952 Predicted sugar isomerase. (391 aa)    
Predicted Functional Partners:
RhaB
Rhamnulokinase; COG1070 Sugar (pentulose and hexulose) kinases.
 
  
 0.996
RhaM
L-rhamnose mutarotase.
 
  
 0.978
RhaD
Short chain dehydrogenase.
 
     0.962
AraA
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.886
RhaS
COG1879 ABC-type sugar transport system, periplasmic component.
 
     0.778
RAM_20160
Hypothetical protein.
 
  
 0.767
RAM_26020
Rhamnosidase.
 
   
 0.618
RAM_29575
Rhamnosidase.
 
   
 0.611
RAM_29495
alpha-L-rhamnosidase; COG1049 Aconitase B.
 
   
 0.610
RAM_18645
Hydrolase.
 
   
 0.602
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.