STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AraAPutative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose. (473 aa)    
Predicted Functional Partners:
araB
Ribulokinase; COG1069 Ribulose kinase.
  
 
 0.980
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
 
0.904
RhaB
Rhamnulokinase; COG1070 Sugar (pentulose and hexulose) kinases.
 
  
 0.893
AraD
COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
  
 
 0.890
RhaA
L-rhamnose isomerase-like protein; COG4952 Predicted sugar isomerase.
 
     0.886
RhaD
Short chain dehydrogenase.
 
     0.866
RAM_16715
Hypothetical protein; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
 
 0.824
AbfA-11
alpha-N-arabinofuranosidase; COG3534 Alpha-L-arabinofuranosidase.
  
 
 0.823
RhaM
L-rhamnose mutarotase.
 
   
 0.818
RAM_32880
COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
 
 0.816
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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