STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23190Hypothetical protein. (310 aa)    
Predicted Functional Partners:
RAM_23185
Hypothetical protein.
 
     0.867
RAM_23195
Hypothetical protein; COG3291 FOG: PKD repeat.
     0.861
RAM_16695
Histidine kinase-like ATPase.
  
     0.635
RAM_33255
COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.627
RAM_34560
Anti-sigma regulatory factor.
  
     0.617
RAM_38950
COG3469 Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
   
 0.588
RAM_23500
COG3979 Uncharacterized protein contain chitin-binding domain type 3.
  
     0.583
RAM_26750
Hypothetical protein; COG2273 Beta-glucanase/Beta-glucan synthetase.
 
  
 0.581
RAM_21020
Glycogen debranching enzyme.
 
    0.522
RAM_38105
Beta-mannosidase; COG2755 Lysophospholipase L1 and related esterases.
 
 
 0.502
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.